Scaffold Ga0209628_10621941

Overview

Basic Information

• Taxon OID: 3300027891
• Scaffold ID: Ga0209628_10621941
• Source Dataset Name: Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1060
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209628_106219411	F004007	N/A	LRAMLLVQGRGEMAVLPAVTAVLLHHSAMDIWTEGYNVSTG
Ga0209628_106219413	F008821	GGCGG	MQLLQYCYITVLWIYGLRAMLLVQGRGDMAVLPAVTTGLLHHSAMDIWTEGYNVSTG
Ga0209628_106219414	F004007	GAGG	MLVQGRGEIAVLLAVTAVLLHHSAMDIWTEGNVVSTG
Ga0209628_106219415	F004007	GGA	MLLVQGRGEMAVVPAVTAVLLHHSAMDIWTEGYDVSAG
Ga0209628_106219416	F004007	GAGG	MLVQGRGEIAVLCAVTAVLLHHSAMDIWTEGYDVSAG