NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209628_10262594

Scaffold Ga0209628_10262594


Overview

Basic Information
Taxon OID3300027891 Open in IMG/M
Scaffold IDGa0209628_10262594 Open in IMG/M
Source Dataset NameCubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1824
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000003Metagenome14941Y
F001302Metagenome727Y

Sequences

Protein IDFamilyRBSSequence
Ga0209628_102625941F001302N/ADGEKLLTHLNSALKVLLGLDIFPRVPKKRLNFVDQCN
Ga0209628_102625943F000003N/AMLYREIIAVCSDIHTKHINTLCGQNVELVNVKLMVSMVNIGF
Ga0209628_102625944F000003N/AMLYREIIAVCSQIQTKHINTLCEQNVELLNVKLAVHTV

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