NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209628_10212127

Scaffold Ga0209628_10212127


Overview

Basic Information
Taxon OID3300027891 Open in IMG/M
Scaffold IDGa0209628_10212127 Open in IMG/M
Source Dataset NameCubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2045
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000009Metagenome8556Y
F032693Metagenome179Y
F032697Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0209628_102121272F032697GGAMYREKTGAQNIVKEIKQYQKKWLQHVQRMDTKRIPKQALQYRPKERGNIGRPKKRWRDQLYFEDQGRGNTPNPSVT
Ga0209628_102121273F000009GGAMEKINWTDHVRNEEVLLRVNEQRNFLHEIRKRKANWIGHILRRNCLLKQVMEGNVKGEMEVARRRGRRRKKLLDDLKDRRGYSQLKEEALDRTMWRAGFGRGFGPVVRQTAK
Ga0209628_102121274F032693N/AMLTNDGRCTHEIKSRTAVAKAAFSKKKTLFTSKLDLNLRKKLVKCYIWSMALYGAETWTLRAAHQEILGKF

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