NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209628_10148761

Scaffold Ga0209628_10148761


Overview

Basic Information
Taxon OID3300027891 Open in IMG/M
Scaffold IDGa0209628_10148761 Open in IMG/M
Source Dataset NameCubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2449
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Sterculioideae → Pterygota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000006Metagenome8944Y
F087382Metagenome110Y
F090558Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209628_101487611F087382N/AMGLPLHRGPVGEPGGGSFVRSFERKEKYIWVPFLDLEAIKNLSLGAIWNFSKGTGLS
Ga0209628_101487612F090558GGAMKEGSSGGASPCEGFQGDLEGGLLYWGIQKMRFLRDMQNAL
Ga0209628_101487616F000006N/ANIKTDLQEVGGGCGDWMELAQDRDRWRALVSTVMNLRVPKMQEIS

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