NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209628_10084257

Scaffold Ga0209628_10084257


Overview

Basic Information
Taxon OID3300027891 Open in IMG/M
Scaffold IDGa0209628_10084257 Open in IMG/M
Source Dataset NameCubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3203
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075026Metagenome119Y
F085847Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209628_100842573F085847N/AMGDLPDFQRGQIVGACLAGASVTTMTTLLGLSRAAVSKVMTTYTRHGRSSSAKRNSGQKPKLSERDRRTLKKIVSINHRSTIAKVTAELNIHP
Ga0209628_100842577F075026N/AMRGVQTCSAADVARELDIHWVVHRIVRDQLDYREVCAHWVPKHPTDDDKAHCMGLYGPLDMLH

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