Scaffold Ga0209628_10034378

Overview

Basic Information

• Taxon OID: 3300027891
• Scaffold ID: Ga0209628_10034378
• Source Dataset Name: Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4714
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014030	Metagenome	266	Y
F064841	Metagenome	128	Y
F081498	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209628_100343783	F064841	GAGG	MLGPLQNRKSDLSVRNGVMLYKKLIRPMMDYACPAWRYAACSHVRRLQLLQSKYLNLALVPTDT
Ga0209628_100343786	F081498	AGGA	LSPILFNLYSKCLTKKALDGLGDFNTRGKIIQTVKYADELVLIAKEETVLQGTIDKLIII
Ga0209628_100343787	F014030	GGA	MRIIAERTLEIDEELCVYFIDCQKSLERVNWTKLMQILKRTGIDWRERRLISKLYMDRRVKIRLD