Scaffold Ga0209380_10233937

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209380_10233937

Scaffold Ga0209380_10233937

Overview

Basic Information
Taxon OID	3300027889 Open in IMG/M
Scaffold ID	Ga0209380_10233937 Open in IMG/M
Source Dataset Name	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1079
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000863	Metagenome / Metatranscriptome	856	Y
F007371	Metagenome / Metatranscriptome	352	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209380_102339371	F007371	N/A	QQDIAGDGMKQPEDSDSRGAPGSRRAPEYVVVVSASDWVKEHFPAAGANLWDALHTGHDRHRDPEPDLEAEP
Ga0209380_102339373	F000863	GAG	MYKTESGKAPPTGPGYRLPEDGPLPDLALYERLIADGIADADRRRTAVDHVTARRLAIWLAARPQSPVFARSLVRFVDTGAISDALRAQLRIHARSGTYADQPQAARLMYYCVARGADAGPVGEDFGAICDQIDRADVM

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