NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209380_10013695

Scaffold Ga0209380_10013695


Overview

Basic Information
Taxon OID3300027889 Open in IMG/M
Scaffold IDGa0209380_10013695 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4654
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000673Metagenome / Metatranscriptome944Y
F021825Metagenome / Metatranscriptome217Y
F105673Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209380_100136954F021825AGGCGGMKKDYQHCLDKLATAAPETKSALIRSLLPGIDAALNSGQRLKAIWEALRREGLQMSYHSFHKTVSRSRQMKKPTPASGLGKHEEAPAAQGSIETKVAAVENRDPFANLKRLEQNRPGFHWRATRHLKTSVNEREDFSDKHNR
Ga0209380_100136955F105673AGGAGMQCSWIIGERHGDWNIKGWGHFVVYFHLNLLDFLRFGWYHFEEKVVPQWYRS
Ga0209380_100136956F000673AGGAGVDKKGFSRNFRYPSAELRDQVRAAVKERGFRSEQAFLIAACEHEIRQGANTEATEQFEARVAATLTNLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRDTLKGMVTDD
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