Scaffold Ga0209380_10001386

Overview

Basic Information

• Taxon OID: 3300027889
• Scaffold ID: Ga0209380_10001386
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16321
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011511	Metagenome / Metatranscriptome	290	Y
F012141	Metagenome / Metatranscriptome	283	Y
F047844	Metagenome / Metatranscriptome	149	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209380_1000138611	F087522	GAGG	MKRLASIFVVTGVALLFSAGPVVARPQAQSTATPARHKLLLRATVKPGEILRYELEAAGSFLPVEDASGAILSPPRGPCDYAMTAILTLRPQVPDKDGNIAVEATYSKARVTSVRCALFSSPDFEKRLAALESSAVMFRVGPHGETALNHLSDGYFKYWDGGDLLRKVTEDLLQTEFSPQPVAEGDSWKPRGQFAYSRDRALKDLELSGADLRFRNLVQVDGRACAWVTSQYIFSPIDLPAVGTASGGGGVPAVGNNAVAAVLHISLLLDSETHHVAWLDRSQTIDNKLTLASPFDDGDGSDDPSVGEDPGGGQNPTPDLSNRRSVNPGRYPFMTFHFQEEARARLLPDQRSVEWLAALKRFEATPEPGSGTTPLPATKTLLPNPMIQAAKPAVVKRTSRVVVDSDSLVPTSAGFTRYEKGLCRDAWFCATVSVAMPGDVRISEDTPLRAVYFAQTRDLLLSVAVGPALDFRGTGLTEDEQLKREANYYLENFVWMAAKPGIGTTFSSATLDGYPGLITGFSATERDLADMHGVLGLMLTPWGKVVPVSCSSDHGPSAEMQSLCEKIITSVSLRR
Ga0209380_1000138613	F011511	N/A	ESEAAYNFSSQPAVQQLTTLFQGVAATLEFGRRLAHNHRYQKLALDDELKRMEDEARRGDLVELQAVKPLLQEIYDDSSVMNVVRARAQRIMEMGPAAAGGR
Ga0209380_100013868	F012141	GGAG	MGNRYWVWVVVRLGVGVAIVTWAASYMVPGSGEKEFQKTLDAMKQVRSLRAAYTANPFGVQHNEMLWEIDCNRDIVHHQMHLVQTASGVSTAQEVTRDELYAGGFEYDRQNDGSWSKGQYPYRGPAKGYCGSLAQGVDSNLLPQIATMIKRGVLQKGDKKTVNGVRCREWLVTMKGGTRGLEHDTVCLGLEDHLPYEMTVDWENSRTSFSDYNGTIQFDGPEAALEPASNRAGSN
Ga0209380_100013869	F047844	N/A	MQQEQEAAENAPTGFKNYDAGEYRLFVPFPYSLEGRENGGAVLLGSRLGITNTEVLAGTAIPIPRNSSANDLVNLARGLAGQHGQAAFCNSIAVGQRKVFRCGWQGSPYLLGHQVWGSMEFVVASNSLIPVMCVSPDEFQCLGHDQWGYHTCDNRNPTWAEVQKTQAAITTRFRDETTTAEVCDRIIYPSIQLKEDIVVHPASIPEGKAPAALARVPEDRSVVASEPQGMSLAELARQTRQAPHEKGQAKLDNAEGNSAPSGFESFSLQYCQNPQQCSEASVVIPEKTEVVSRVNGQYIFKAAMDGEPVLLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKPDNVSTQDLTIEGKRALMTRFRYQRDQKRWWIGERVLIENRGGQFLVGCTAPEEHFAAAEALCTTLLNSLRLP