NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209380_10000157

Scaffold Ga0209380_10000157


Overview

Basic Information
Taxon OID3300027889 Open in IMG/M
Scaffold IDGa0209380_10000157 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44607
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (82.69%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F002560Metagenome / Metatranscriptome548Y
F003071Metagenome / Metatranscriptome509Y
F003851Metagenome / Metatranscriptome465Y
F026325Metagenome / Metatranscriptome198Y
F059707Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0209380_1000015723F002560AGGAGGMVEHNPPAPADRSRTPVIPLPIALYVSGELIFELYDGGQPSRRFSIRWDRFVPTKENEPEAVSPQTVLRTRQD
Ga0209380_1000015724F000208GAGGMRIRVTTRADLFEQRKQQHIERGYRIEDERPLPVNGFCSFIAVSEMLESDGIGELVTQALNGMPR
Ga0209380_1000015738F003071AGGAGMKKLITICFALSPLCGVTVAQDTMKQDNMKADTSAKAVDVTGKISKDGKMFVSDKDGKSWTITNPDAVKGNEGHHVTLNAHVYADKKEVHVMSLKMTADSMKNDGMQK
Ga0209380_1000015742F026325AGGAGMTDPASAIKGEVHELVDLQIQTLRQPSYLNTSDLLDYRVRSKKLAALYQELDHLRRASFEGRLREHLRVHSLRF
Ga0209380_1000015743F003851AGGGGGMKRREPDTSSRPAIDKGAKRVARALKEATHGRVNTNDPIMEQLKQCPEAFKVGEILGKAFDSLKYAQHEGEVGDRYLPPAGTVIPPLV
Ga0209380_1000015747F059707GGAGMVLLHDLAARVDTASDEHEYGDNQVVWLENGRKVLDYMEADERFSPASFKDSMEEQGIAVNQNDLIALIDNMRSLSKQWRSSIGKHGELVFYIDAC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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