Scaffold Ga0209275_10133562

Overview

Basic Information

• Taxon OID: 3300027884
• Scaffold ID: Ga0209275_10133562
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1302
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F031613	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209275_101335621	F000739	N/A	AISGGAGGVLTGLAAVGIDPQHFNLQTGMGATLHIGVAAALINAVIGVAAYLQKSPLPDGNWINKPQPNG
Ga0209275_101335622	F000696	GGA	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTETDSSLQVSITDATAPPNQLPTDLLVPVKIWERPNGCTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFIGATQDTEIRLRYSKAYPDLTDSTSPVLVRNAQEAIAYATAALAAWSRGSPLAERWDQAATDAIEDLVITAVRREQQSSRRRRPYSSRTGYTPF
Ga0209275_101335623	F031613	AGGAG	MAITITVLPNNTDGSGSNLLYAIGTLTFSGNYVVGGNTLDFTTVAD