Scaffold Ga0209275_10081405

Overview

Basic Information

• Taxon OID: 3300027884
• Scaffold ID: Ga0209275_10081405
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1624
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005134	Metagenome / Metatranscriptome	411	Y
F044033	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209275_100814051	F005134	N/A	MQNSIINIEAGSDLDAKVQAICGSTEDANTLGQLLQAGFLYKRYQAQKDNPDLAALLDQVRITPGGDRVTLHMSLSDDQMTSLIKHNTFSFKM
Ga0209275_100814052	F044033	N/A	VTVDFKGIELQIDPDVRLAAAAGGAARYYGEAAGLTSEEALELQKSVIAACRETFEHLMGERPHLTVTLMRYPERIEVAIAHKGGAAPAVGLDRIAGFANQFGGSGGLGGIDRVQYETRDGLAITRLTKYLERGTGIA