Scaffold Ga0209590

Basic Information
Taxon OID	3300027882 Open in IMG/M
Scaffold ID	Ga0209590_10005629 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209590_10005629 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5452
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5452

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F039066	Metagenome	164	Y
F041122	Metagenome	160	N
F050252	Metagenome	145	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209590_100056291	F050252	N/A	MMAVSQETIELSLASGTYTILLRLVSDNGTSLNPDVTSSISITVTQGPAVGTPRIEISYVEITYPTPGLVLGRDVTISFRITDFALVPPGRGEHVPNEGHVAVFLNGVYYMTVMAFRPIPFSDLVDGDYTVMVQLVDDAGQPLSPDASASVIFRIQFAAIVDINPYLSITQVVLAGAIFVVLFYRGWGRNILATLSARIRGKNA
Ga0209590_100056292	F041122	GGGGG	VRPHKSAAASVAEARPRSITLTLFALVSLLGVSLSSSPVAAAAPTVTIVSPTDGSVIANGTPVLVHFAVSNFAFVQPGRVGQIGSPNEGHANVFLDAQYVRLLTNVEPFSLPLTSGSHTIRIQLVADNGTALNPDVSASVSVVATQGPGGGVPRIEILSPTPFESTGHGFYVSYRIQNFTLVEPRGQPNAPNEGHVQLLVERKVVMEVVQYEPVLLVSLPEGDITIGVRLANNDDNVLANPSASANVPIHVVASSAVSLPLVSNGGLALLLAFILVVLILRRRKVATQPPKGRGGNP
Ga0209590_100056293	F039066	GAGG	VNGRILAFVLATVGMIIVSGIAASNGRAAPPPTLSIVSPSPNAVIGNGTPVVVVFAVTNFNLTDPGNGTSSPDSGHVDVFVDGGLTAKASVNTIVLALPSGPHTIRLQLVTDNGSALNPDVTASVAVMVTQGPAGGTPGLSIFFPREGALVGTDSTISFRTTNFVLVAPGGPAGVPNEGHVRVLLDGASYAELTDVAPLHLNLKDGPHTITLRLVGNDGRPLSPDVMVSLHLQVQALAGRVTPFDATPYLALANLLIGLGILAAIYRKLEAH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209590_10005629

Overview

Ecosystem & Geography

Associated Families

Sequences