Scaffold Ga0209590_10002168

Overview

Basic Information

• Taxon OID: 3300027882
• Scaffold ID: Ga0209590_10002168
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7807
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006646	Metagenome / Metatranscriptome	368	Y
F006720	Metagenome / Metatranscriptome	366	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209590_100021682	F006646	GGA	VSGQLLIPYLVLWAALMRALLVRAQIAPPMCGRCGMKLERSQLGETICRCGH
Ga0209590_100021689	F006720	GGCGG	MQLRLTDPSYTDRLANFLRSLGQTAIVAGPGQLEVDVPASTSSRVELGIYLRVWRVLYPDAEVQVENAGDEAPDV