Scaffold Ga0209590_10001850

Overview

Basic Information

• Taxon OID: 3300027882
• Scaffold ID: Ga0209590_10001850
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8270
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011834	Metagenome	286	Y
F026533	Metagenome / Metatranscriptome	197	N
F046278	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209590_1000185013	F046278	GGA	VGSAMGFLVRFERIVESLMSLVSLIGFASTLVLLFVFLTTPPVTSITETSVGVQGVYQYQVKNITIQGVPFFWVFTSLVSLSAGHTYKSAKHLFLHAKGKHPPAAVADPN
Ga0209590_100018504	F026533	GAG	MPVEKKQLSKKDVQKFDPSPLYLYTAKDALNRVTVLKEANKDAYLIAGRYSGNDKDNRLYTPLNEEESKEVEKLVRIGRKDATISFL
Ga0209590_100018506	F011834	GGTGG	MVVEADFYRVRLRFKRLFADPAIFEDEKNAARRFLFSTRPSTSETAIYQITDDISPIDNVGKSPDIAGTARYVHRGRVVRSEYLENAKVTLEYADFGSGLSPYDHQRLWKRQKWGRMNFDIEEFHHEHLKIEIPDIPELYEMLRVRADPTTLVDVELPDLPDNFFRSAVGYLETRLTQLAEQEHQTIDIYVARDLLPEEKQALEKRLTRPSTQSTIYILLQKTAGSAAL