Scaffold Ga0209590_10000028

Overview

Basic Information

• Taxon OID: 3300027882
• Scaffold ID: Ga0209590_10000028
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26116
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002514	Metagenome / Metatranscriptome	552	Y
F022171	Metagenome	215	N
F037658	Metagenome	167	N
F044399	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209590_1000002812	F002514	GGA	LRDRDVMNLLDQIELYVLSVEGKRVAQKDYWLFIYNSMKSGLLLTEVMEKHLQYKLEALGVKNRQP
Ga0209590_1000002818	F022171	AGGAGG	MADDLLRTITTQALIAAFALLLAISSLLRLLFFVYFAQPGGFGFPMRPALDTSAVVETALTVILFLLSLISIYSLLGLRRRYSRLLAMAEKLGR
Ga0209590_1000002826	F044399	N/A	LVVEGAEYPERIYSNGNMVNFPLGQESIVSPSQVFPAKLLQSLTPRIILRGVLLAFFPWAPAYLFERADFWFGQTSNGYWYYQFSSTRLEAFVISFALGGILVAYLLRPRWAIIQVLLSASLVYVLFYFACPTYMVGPVWKSECYSFGPDGLAGVRLGTMMFSFGALPAIVRASYKEDKLNKRLRSWIAIFGAFITSVVTTWFPLTAWFSGVTYLAPLVPFQVALLFGVSEIAVGIQAAKMSRSILVATASGFTSALLLSGFLWPLLCSSCDRSLLFLTVPSWGFFALIGGILELGLPRKLSLGPLRHFNPRLEDIRRVGIAVVLLFSLWTLVSFDLWDPSVLYATSISPGPGQLTLGAPTYPYVAGYYNSTQYRICCVQIGVSFTKVDLRALAPNNFLMAGMGVQSPNCCIDGWDFGWRADLFVLPNGTRVVSGSSWETCDGNANCGGIFWEHLRYHAQQIIRPTNTSTPVYLRMMWHYDQPNWHADWYYNYTGQPWTKFGSFVPDFREGHYFDIGVVGVGNYPWAFAFFYQFGVASKTPVPGWSAQLLYPSFVHPDGSWRLMERANIIQGWHSYWKASYRWGGQPYNGVSALAYANDETIPLGILQLSYVGTGSLKDKTVLW
Ga0209590_100000288	F037658	AGG	MAATVGTSLDRPLIESIDAALSALGTSTRDSVLLYLRKRYSISLEETPQRMDEFLQALRALLGYGARVIEKLVIARLVETNEIPLAEARGRNLAEIVTLSSKGRNKARPTV