Scaffold Ga0209169_10000881

Overview

Basic Information

• Taxon OID: 3300027879
• Scaffold ID: Ga0209169_10000881
• Source Dataset Name: Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18558
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004875	Metagenome / Metatranscriptome	420	Y
F013683	Metagenome / Metatranscriptome	269	Y
F015675	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209169_1000088116	F015675	GGAG	VLTNHGPDRNIEDLTDEEIYAAIRYLEPAETSTDERNDNNGVVISVCLYIALLWCLAFVWLYWR
Ga0209169_1000088118	F004875	AGGA	MRAFSTFVLAILRAGALVSVILLLSGLGLAQQVATARATISFNFWAQGHEFQAGDYVFDDEVPGSIAIHREGTNSAIGVSVILYAIPQEKETPRVIFVLRDGKYFLFELWGVQGRYVVTAEFQHRGEASEQQRQVPLTIVESHDQ
Ga0209169_1000088120	F013683	AGGA	MEFKEYDFTRNPVVQNENFFLESKCGSCGFSILASSIDELIEHEAAHRRQCRRLNSIA