Scaffold Ga0209283_10013787

Overview

Basic Information

• Taxon OID: 3300027875
• Scaffold ID: Ga0209283_10013787
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4833
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005560	Metagenome / Metatranscriptome	396	N
F009677	Metagenome / Metatranscriptome	314	N
F054748	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209283_100137872	F009677	GAG	VIGWLNKESWILVALALTLLATITSSAYAAAPSPQENVSLYAGNKIIISSTQQAIKSVIVRGNLTAATVSNVNYPSKNFTLTTNSTQLYTLNIWLSYPSTYTTAIIINDPEARSNSQYTSYYVSAGDLNLTIFADFQPAPSNGGGVPVSWSSFFGWFSQFGNAFPLWIKVLYTLLGAQFAFVGYRWIKFEDEKRRIEGHLPPLDRGNRIYLWIDVVFRTLLAGFIVSLALMLGETVIITVAQYLFFVTLNLFPLVDLFSLFFVAVLGLIIYLAREGLDKFLDLKPMMED
Ga0209283_100137873	F005560	GAG	MPAIVFAAVAVAIELLYFSYMVGRGMMDEAFTISLGALRVPLSIALFFSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVRAAAIVLTPFTIVLFTPYIVESSWFISAVASASNAIPSLRQTAINFYAWSFGLARMDYSVKFVVSQLSAAFSSTVVSGLLLWRVKGSRNLILALRRKR
Ga0209283_100137874	F054748	GGA	MTTDETPTISDPSKRLTEMILKGEDQESARIAAEIVGGRSETNDIVDAISETMNIVADLHEVERYTVQQVESCERAAESALNAIRPGLKVEQRRISGKVMVTSLHGDPHRFDKTLLLTMLEMGGFSALDGGEELSPEEVVRNVKSLKPDVLAIPLVTASAVNDLLRTRSLLANSGVKTKLVTYGRGVAKLPSDSQLSAMEEDSLSILSRIAEILIAR