Scaffold Ga0209283

Basic Information
Taxon OID	3300027875 Open in IMG/M
Scaffold ID	Ga0209283_10001235 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209283_10001235 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13755
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13755

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F001093	Metagenome / Metatranscriptome	780	Y
F005263	Metagenome / Metatranscriptome	406	Y
F032969	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209283_100012351	F005263	GGAGG	LLVNKALRHYIEWGRFVENFKLVTSDPRLMKLFWSHLTVEEAREMGLQNGNSVVVEFILYYFRKFDLESLLKTFRVIGAEYSNAFVYSESGDDRNRTIILRHSMGRSASAYYGASLKALSSRLGMRVELEESDDQLVCKI
Ga0209283_1000123511	F032969	GAGG	VIVDAPGENSRYCPGIVCNSCRFQTLTRRCQKGLSIRPIVGLVSNMPSSPRDSYAQGQGAESKKSSRPDPKIVQASSPQLFRCPRCSALSFRILFRDRDVAGICTECNLQLRTDRRIGRATREYYAEFNRQVGAGDSERIERIFLKMISVSEAKRVYPVVRRLGYRTKQSSPMLHARLVMVETTHNQAVVLIEKLRERGLQVALQDNFQLTQPEYILPAASIRKA
Ga0209283_1000123513	F000611	AGTAG	MQTNMNFPTYVFATVNPGRSTKVVDELKRNSQIDIIAPVTGRWDLVLRLKPNTPHNIYQTVKEIREINDIRTTDTHTGFDGMQPNKKLESQMALGFSLLNVQHTPVENTIKQLSNIPGFVEACTVPGQFDIVALWQARTSEDIVKASFEKVTHLEGIFKSETLLAYAPFFKA
Ga0209283_100012353	F001093	AGGA	MAAQTKGRESWTEEESPRTTIRQSSPLKLSRVFRFVDQQTGAPQISDFPDFNPTGDTPLEIRMKHFTEIENFTFLGYTLAHELGGTTPRPIRTVADLQVPDEEFQNFVNQAKTANLTDEELADTVLDVGINWEHFVASNDNRLIPEHPLKITDVLMQEKIDSLDIITEAFVREINLRSIEKKTGTKSRQT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209283_10001235

Overview

Ecosystem & Geography

Associated Families

Sequences