NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10130989

Scaffold Ga0209465_10130989


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10130989 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1240
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012270Metagenome282Y
F033145Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0209465_101309891F033145N/AKEASPAKDVSSIVATAKADTKKSKHYKPKVFAYKPKVLARQRNNYRYGNALGYAQEYGYGPRAPFFQ
Ga0209465_101309893F012270N/AMELSTAMNRLLIAGILIISTAPLYAQRQQQNVAKLKADARNVVGTIANDKAKTQTYCQILDLARQLAQAAQEKDRKKAKTLVERIDQLQKQLAEFVALSKIVEQVDLNSPDGREIALIIQSLDQSCPD

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