NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10060347

Scaffold Ga0209465_10060347


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10060347 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1827
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000966Metagenome / Metatranscriptome819Y
F039028Metagenome164N
F044135Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0209465_100603471F039028GGAMKTLITVLALAALIAATQSAAAEPGDRRDIGQPGEGYQGTYQGYPLSDWYRTDGW
Ga0209465_100603472F044135GAGGMKTIATRYAMTVGLAGALALTAASYSFAQIRTGAEGRTTVSQYCAPPDEDSPDARRFYCRSGV
Ga0209465_100603473F000966AGGAGGMSSRKLIWDPEHWRFRAEEARTVADQMTHEGARTIMRRIALDYDRLAKVAEEQLADQERGAIGRKS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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