Scaffold Ga0209465

Basic Information
Taxon OID	3300027874 Open in IMG/M
Scaffold ID	Ga0209465_10009867 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209465_10009867 Open in IMG/M

Source Dataset Name

Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4232
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4232

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama: Oeste
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Panama: Oeste

Coordinates

Lat. (^o)

9.1086

Long. (^o)

-79.8436

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001555	Metagenome / Metatranscriptome	672	Y
F005602	Metagenome / Metatranscriptome	395	Y
F064300	Metagenome	128	N
F085448	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209465_100098672	F005602	AGGAGG	MAEVFIYGLPLIALIAAAFLVYYFFPAAFPPFWRQAHVPNQGVIRRDWVATGRIDFATPITKITSNPDDIDQPTEFKLLVEERRIVESIAGNENLEIQWRLATLREAKAVITQYHKYLSDNRLIKTVFDETTSSPPPVMTQGHPSGDAPDNTEAPGRQSNGAKS
Ga0209465_100098673	F064300	GGA	VTAVPVAVRFLRRIDATVVQWQERLRSFLPLLGTTISRRTALTFVAAGMRRRIDAILPHGELVVRTVRQLLGNLRPRKMTLTLVVAGLVGLVLILLLLLEISLRMELAKEASDAAIDVTSAPSARPQKMEFGDAFPTQPTGSILLQSVEQLPGAQPSSDYGQTFGQVFQEPVPLPRSRKP
Ga0209465_100098674	F085448	GAG	MMGQAAIYNAVNRPGLYSSKARQGPHPGPAVIRAGNHLAVACLFLGAAFAAFVSGSLEQRIGNLFSVGVIPAVGFYAGGHILGQLLVFGVQLCDMIMARCFRYVVRLLNDLLSSPGTHVSNRLTGRPHQTKRAEVTPDALFAADIRNSRFSPPMR
Ga0209465_100098679	F001555	GAG	MKSPIRQCALLLIAFTVWAKPALARSYLNCSTKKVVIVDAPTGNSSLSTEENVGFWIDDAAKIMTLADGTPLIVRRFDDRWISAARGDVSYELDRQDGNLTYASSTTKDGTATII

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209465_10009867

Overview

Ecosystem & Geography

Associated Families

Sequences