Basic Information | |
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Taxon OID | 3300027873 Open in IMG/M |
Scaffold ID | Ga0209814_10168586 Open in IMG/M |
Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 941 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Tennessee | |||||||
Coordinates | Lat. (o) | 35.8443 | Long. (o) | -83.9607 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012470 | Metagenome / Metatranscriptome | 280 | Y |
F030801 | Metagenome / Metatranscriptome | 184 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209814_101685861 | F012470 | GGAG | MSKYQELSQTFAESVQLQAQYVSDCCAFSNFLFSQMAEYLAWPRDQMAFAHDESLQTEGPTCNSNSVRLHDDGSIHFFALFTINRFDNVNHRYQLIFPFKVKKLEDSFLLTITGLVEEVLLGTKDTEEMKNVYEDLFAAMKS |
Ga0209814_101685863 | F030801 | N/A | PDISAGIRNAVGEKIIEMQRLADQLEDILYQAGLAQRRGRHKDSRCEDIKTICRDIADEVTPT |
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