Scaffold Ga0209814_10124196

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209814_10124196

Scaffold Ga0209814_10124196

Overview

Basic Information
Taxon OID	3300027873 Open in IMG/M
Scaffold ID	Ga0209814_10124196 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1101
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8443	Long. (^o)	-83.9607	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011858	Metagenome / Metatranscriptome	286	Y
F047168	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209814_101241961	F011858	AGAAGG	MAFVFHIHTAPSCEPTHSSSCASVEGSDWNHSCFEIVSGRNRGKCACVHRHPAGLSHEEEIFISDLISLQVFARDQGGYRKENRA
Ga0209814_101241962	F047168	GGAGG	MAIGDGMLAQVLLDYFQQHAEEFEQFVLERAGIGEGYVRWRGEETQKRLVLKITTLGSGPSVVSEREYALKMETISS

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