NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209814_10120413

Scaffold Ga0209814_10120413


Overview

Basic Information
Taxon OID3300027873 Open in IMG/M
Scaffold IDGa0209814_10120413 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1119
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030801Metagenome / Metatranscriptome184Y
F081531Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209814_101204131F081531GAGGMERIRVHLEEFVGKLNEELSNHPECLPGMRVIMQRPELKYSYEICDPTRDPTKPGSLQERMRADRVFKEVIAKVNEQYALMRP
Ga0209814_101204133F030801GAGGMSDISAAICNAVSEKTAEIQRLADQLEDILHQAGLAQRRGSHKDSRCEDIRNICQDIADEINPT

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