Scaffold Ga0209814_10015146

Overview

Basic Information

• Taxon OID: 3300027873
• Scaffold ID: Ga0209814_10015146
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3081
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003830	Metagenome	466	Y
F008593	Metagenome	331	Y
F020236	Metagenome / Metatranscriptome	225	Y
F027042	Metagenome / Metatranscriptome	196	Y
F031783	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209814_100151461	F020236	AGAAGG	MKKMVGFIGLAFLPLMVACSSMAPTSQLQPTAVTDFKSVAGKWEGLLIREHYFTQNYDRVTLVIGDTGACESILERTGTTAAGGHVDYSVIRVIDEKGKLVLTDGKLSLKFEKGGQATLQLYVDPGSSERMLKADAKDSEGFTYSAELKRTGDSASAK
Ga0209814_100151463	F008593	N/A	MLMQPYKGYFIEGSALLVHPFSPDWYVGGSVLVSGRSSSIVEIGRFQLQRFTVSIKEVAEWFGLEVARIVVDECLAPREN
Ga0209814_100151464	F003830	GGAG	MMIDDDTLKQLLRINDELLQLCKFLNEKRDMETSSRLIPLIDDLTHILIEAGKNKLH
Ga0209814_100151465	F031783	N/A	MLLAAGCAIQQPPVIQPPVIQQAPVSQQPPVSQQPSGLSDTPKSQLNKNRDRDLYECERESAFAGAGDKRKAFDNCMKARGY
Ga0209814_100151467	F027042	AGGAGG	MTLAVRIISLVMLVSLLGCASQIVQTSQPVTEKTQEEQPKKPAMPTITYRPGF