Scaffold Ga0209814_10004614

Overview

Basic Information

• Taxon OID: 3300027873
• Scaffold ID: Ga0209814_10004614
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5214
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031783	Metagenome	181	Y
F040713	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209814_100046141	F031783	AGGGGG	MRLRLPVVAAILLAGCAIQQPPVSQQPPGLSDTPKSQLNKNRDRDLYECERESAFAGAGDKRQVFDSCMKTRGYTPFSTDRPEWPHTQ
Ga0209814_1000461412	F040713	GGCGG	MDEDYKGHHIQSVPRHLLPDSERWTAQVLINWTDGRRKQFRRFDVKRGFATEEEAELAGLTFARKWIDDGKPKLRESGTGGS
Ga0209814_100046145	F040713	GGCGG	MDEDYKGHHIQSVPRQLPDSGGWTAHVVINWTVGSREELRQFEVERGFATQEEAEMGGLIFARKWIDGGRHGSSNRRIQLD