Scaffold Ga0209579_10001221

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10001221
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21784
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008316	Metagenome / Metatranscriptome	335	Y
F032246	Metagenome / Metatranscriptome	180	Y
F061068	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_1000122123	F008316	N/A	MSLKNAAFFALIGMTLLTVMLAVVFIRDVSALLAGAIAAITVLMEFINLLASLSVAVFLYVFYRAQS
Ga0209579_1000122125	F032246	GGA	MGKVTIEIDSKWVKIVHSPVYWIVVTLQGLSISFAPLFLYWCGKGTLFHGTEWLFVPLCFGIIFFVGFFYMALGGAVIGQLRKKDFSA
Ga0209579_1000122126	F061068	N/A	MTVHEKFVEDMNGAGIHTEGYLGRFFWEGPAARSDEQNGPTLLDIIKVTTVPLQWDRLDFNYIVYPVGKAGWKDSVADSEGDELEPDGYNDGYAAKPHKDVDEED