 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027869 Open in IMG/M |
| Scaffold ID | Ga0209579_10000114 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 139851 |
| Total Scaffold Genes | 137 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 78 (56.93%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003916 | Metagenome / Metatranscriptome | 462 | Y |
| F005581 | Metagenome / Metatranscriptome | 396 | Y |
| F008506 | Metagenome / Metatranscriptome | 332 | Y |
| F022720 | Metagenome / Metatranscriptome | 213 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209579_10000114114 | F005581 | N/A | MTDTRVGIFGEKYRVLAVESQSLTIRGVRSGAVLTIINPDPETPLTPAEYPPGRLIALSDPSTAPAN |
| Ga0209579_10000114119 | F008506 | N/A | MDHTILVSVAEQMMSGTDVEVSGRVSRVMRTGAKRFRTVRFVADGKEYQAIEQNPEKPSRWGKLARDGHRVVQFRDLTTQKYVAAAVDGKVTEYGK |
| Ga0209579_10000114132 | F003916 | GGA | MNRLTGALIAYLVLGVLTWFTISDSRIRGVTFVILAMFAVKTWLRRHDVMHPDKSEDEDRKDLAGS |
| Ga0209579_1000011479 | F022720 | GGA | MKRPLGITVIVFLFFGAGVYLWIVGAIQLVSPGTLSLMAGRQFMYGWELAGPYMALLFGAGYVLVGWGLFRLHKWARWAAMLVMVIGVAWLVPKISAAELGLQFAWYGFQIMGRAAVAWYLAQAPAVIDVFAAKRQAL |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |