Scaffold Ga0209579_10000107

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10000107
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 147663
• Total Scaffold Genes: 135
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (62.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F000136	Metagenome / Metatranscriptome	1961	Y
F000882	Metagenome / Metatranscriptome	849	Y
F000883	Metagenome / Metatranscriptome	849	Y
F000912	Metagenome / Metatranscriptome	839	Y
F002831	Metagenome / Metatranscriptome	527	Y
F007996	Metagenome / Metatranscriptome	341	Y
F040501	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_10000107106	F000136	GAGG	MAKAKLRILYGEGDDEILKQHSTAIEKAGHIVQQAAGRKAVQEALNKSVFDLVLLGPTLTRNDRHHLPYMVKKASAETSVLVMHADGTRHPYVDACTDTGASLETVLQRIEAMKIAGMMPAAAGAAAGR
Ga0209579_10000107122	F000131	GGAG	MDTIRRQRLLVHFSIILASSCILLPLPLHAEPLSLQGLVTPSTVILKDGHPITFAVHGFIEFQSLSELFPYIESQSQRWKSSPEIDDAARRRLAHDLLRRGIESRIISMTDERPLETLITHTREELQQALAEVKEPTPPGYAEAFLSVQEKWKHSLNCWSAAPSIPARVLSNWYPIDEGISLYGATYDSTEHFWQSVKYHPDVTVGDLTDLLSMIEHTDWTPWLQRLDDSPKIYLPNAYAIEFLRHNLAAERLRWFREELTRQGAQANDHARTIQQRGATAFRFTAYEEKVLWGDLADLFHLVYIFSAPADPIRRELKARHFDGIYLENKKMGFISEEFRSLMLEIWKVKYLEMPRFGEVIRSIPIEIHLSHFLNDGDSPDIPIPVYVSYLNQIRDLARAKAAAHSHRAK
Ga0209579_10000107133	F007996	GAGG	MRNAVLVILAGGLLVMGGYIAGAGKTAVVHAGTPMPMTSAVPKSYGKLVAAIPDSIGTGLIFEGNDGTIRFVSMTGMKEGELARFDQTPTHGGIPKSYGHLVSAVVNNGSTGLVFEDANGEIRLVTIAGVTEAELTRN
Ga0209579_1000010715	F000882	N/A	MAQAAGGKEILSVAVWEPVPDMEAASLATIRELTSIVERKGYGRDLLYRDRDAHYVFLRYWNSEEARRAAQEDPDMLRCWAKLGNEIQIVKVYETLTEIPTNPVA
Ga0209579_1000010741	F040501	N/A	MGQTVPRARLIWIGGGYAAVVAVSAALIFARYVAYVTHPADVAAYGGMWAGGDLALEVLVAGMLLVVTFLAALAIFKYEEAYTTYSKIMVALSLTFPASVGIIAISAISQSDSMLGWVCLFRVFASPFVLMGFGMSRAFARFPVAKRMTNYAMVIEGLTLVFLVVMLFLPFRLHRG
Ga0209579_1000010761	F002831	N/A	VPDTPPEDDHKHHRHAVYASETTGLLLIAVTLLILTLVRYWHTIHWSLR
Ga0209579_1000010773	F000912	GGA	MSLDAFVRCTCIRDGRAKPHPFPDRLMWDETGSPSLSGDPTDEEWEAHDTWVQQSCEHEGYLVSEFLGNITRAQHVREFLRGLQGNPGPKFPILLKKVVYDGTHTGDWIPVKESPALLREVDLVLGSSDILTESEKEFFDSMKRLCEASIATGNPILF
Ga0209579_1000010784	F000883	AGGAG	MSGQVVLYFEDQADALRFALAAGSVMAGEGGKVTDNLVEETTRVSRIRLDAVNAGGSKKSNPVRAA