NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209579_10000086

Scaffold Ga0209579_10000086


Overview

Basic Information
Taxon OID3300027869 Open in IMG/M
Scaffold IDGa0209579_10000086 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)175626
Total Scaffold Genes167 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (58.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000840Metagenome / Metatranscriptome866Y
F001878Metagenome / Metatranscriptome623Y
F009977Metagenome / Metatranscriptome310Y
F044124Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0209579_10000086103F009977N/AMTKGLERPDDTFGSFSVIARLAKVFSTRRLIAPGPGGSLRLNLIQWFGQHALSFTLILAYVPLIATVVTTVVSLILARATLRYTESSDRSLALAREQFEREWAPELHIKLERTSSRDARIMATNLAKISVLMQMVQLRKLSMAVPSLRYFLNEPLVGGMTWSEDLGKRFFGCTGDDYEGQVAVSLTFYAAGRMYRTDWFRFQVQVHNGSLQKLEPVNIAARRVRVLESRKGVHSTPPEMVRDVVMETVKTKTGEHAKAAAASQGS
Ga0209579_10000086127F044124N/AMDYLKGILSGLAAIFVAEFVFFWPIFSREKATGVGVLKILLLQSTLSPRFWIVGTLLFGVFFAASRASTLLRVLFFWIPTLTVSVLGFSIVAIFAYLVAISRHG
Ga0209579_1000008632F001878AGGAGMSAPSRRPEIRRRRTRAEKIAKLRKRLATAATSTDKDRLTAKLHRVGLVSPGIPLIKSV
Ga0209579_1000008667F000840N/AMITLEERIARTERLLRRLEEDQPYLHMRLLPLAAEHRQSANAYADRVRAEAEAELQRLMAERGVPYERNVPQPAD
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Institute for Fundamental Biomedical Research
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