Scaffold Ga0209579_10000048

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10000048
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 262296
• Total Scaffold Genes: 251
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 211 (84.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011574	Metagenome / Metatranscriptome	289	Y
F017229	Metagenome / Metatranscriptome	242	Y
F027097	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_10000048121	F011574	AGGAGG	MAASVGVEAGEPQPGTRIPKRRKAAQEAMVDGTARFFLAKAGAASAAPALDREFSTDGEAMIESLKTGLSYYSVVEWRATADFAGKNPQVKKEAVKKKG
Ga0209579_10000048131	F017229	GAG	MESAENALPDSELAIRVAKLWPHRKHESNSVVGLLCRVGLHRWRRLNLAALVPEKDILHCFWCSKVKIDGIVYDT
Ga0209579_1000004894	F027097	GAGG	MRGDFEADPPVWIWQSDASGTAVETDLLDAARRNWARMLSYAQRFQQDPSTSADILEEILLALSRGRRARRGLGNPIRNLNSYLYVAFVRRLNRRVSREPKIQYVGSLQDLDSFSGIETRGTPPAVEDELLIKELLQYTNERTRQMFFLRMSGYSWKEVARILRTTANSAQVLFNNGMGKARARVMELKGSTAPAGEGRKVDA