Scaffold Ga0209579_10000031

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10000031
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 355916
• Total Scaffold Genes: 303
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 191 (63.04%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001765	Metagenome / Metatranscriptome	639	Y
F003832	Metagenome / Metatranscriptome	466	Y
F005268	Metagenome / Metatranscriptome	406	Y
F005420	Metagenome / Metatranscriptome	401	Y
F017747	Metagenome / Metatranscriptome	239	Y
F076413	Metagenome / Metatranscriptome	118	Y
F101563	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_1000003121	F001765	N/A	MMEGMPYISEHLSSLRQEITDLRNLNANVSKNGHTSEVDQTAFELRTNRLREIKQELSRMLNHPDDPKVWWERFRKSTPA
Ga0209579_1000003122	F005420	N/A	MILSCIGIAIPVVAQTPTIYAESFRKGATKIAEDSFEAKLTPSDATYRERIKDTAGNDRYELTITPQGPEGDNKITSWKVILKDLRHSIYNNILLAAQEPSADAKNNLWWLDPNRFGPVPIRARRIMKVDGFYVAFEVKDLHFTPLDSPYLDSMEVKFAFTNSDPRTAP
Ga0209579_10000031237	F003832	N/A	MQSTAKLQGNETNWPPEAGDVISFKSSTGPETAILKEVRWGLVWRDFILEDGRVIPEHRISGCPQPQVWRKIDEVSDDEREEWEERLLAMAGARMDPRTRDQPFWAELNQYLAYTYLRFKHSERNVQDTGR
Ga0209579_10000031238	F005268	GAGG	MSPSDEEIEAQQVWRTLSEAGLVEIRVDEFAEKIREVKRVVVVRLRELLDFDTSMKERESAASSLGTLKGLELKVLENTPESPDPSEM
Ga0209579_10000031281	F076413	AGGAG	MRLLKVLGLFLCALALCSIATAGVNKMGIHDVSRVTFSSAVRVGTALLPAGEYIVRHSMEGQDHVMVFQNVEGKEVAKVKCTLVPLAKKADKSEELYQLNAGNERVLQELVFRGDTSKHV
Ga0209579_10000031301	F017747	N/A	MMVVLPVSLWAQDTGAAMLRSSGGVLVNKNPAPASTALLPDDLIETQKDIAAHIEATGSTADMRPETIVQFEGDELVLEHGSVSVNTARSMRVRVGCITVTPVSAEWTHYDVTDTNGKVTVSALKDDVYINSGSKNPQDAKQSAQSTHSDRTIVKEGEQKSREEKCGGAAFKESSRFAARGAFMNSPWAIGGATVAVGVLTCWALCRGDDPISPSNP
Ga0209579_1000003132	F101563	AGGAGG	MRKYGPSVLFLAVLAIAITLACGSSPRPRTLESVSLSPPTADAQGGPVQFTATGYFNDQPLSEKLVVVNWGACYQNQQTTAVSVSAGGLAQCASGAAGTYTVWAWAQSAADSCGGNNGEVPVNPCGGAGSCQPTGTAQLTCP