Scaffold Ga0209579

Basic Information
Taxon OID	3300027869 Open in IMG/M
Scaffold ID	Ga0209579_10000023 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209579_10000023 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	471627
Total Scaffold Genes	432 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	325 (75.23%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

471627

Total Scaffold Genes

432 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

325 (75.23%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F000548	Metagenome / Metatranscriptome	1036	Y
F003701	Metagenome / Metatranscriptome	473	Y
F009834	Metagenome / Metatranscriptome	312	Y
F036362	Metagenome / Metatranscriptome	170	Y
F057528	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_10000023100	F003701	GAG	MKNVCLLFRLALFCVLSFCLLLAGCAEKKKPVAPTPPAIRSQLPPASAEIVEHCVVVKQENANTVTCSCQLVTTVIDSRTGHTKLVCKRMKEEK
Ga0209579_10000023106	F000175	N/A	VDENRKGFLLIAATILAARKLSQYEAGARIPATIIAITDAVMWAEKILSVIDDRWPPK
Ga0209579_10000023191	F057528	GGAG	MRLSLSGGSAVLSKGPITPGTMGNITMMTVFGKVSAQVEFLHTGADGVPLAQAFRFLTMEDESLQRFTAAAKQMEEEGFSDAVPHPSGLSAPASETLGLLLHSVRRLAATLVASKS
Ga0209579_10000023230	F000548	N/A	MPNESSTGPRWIGIPVRVCAMTFLFTLLSFAVALLLGILGTVVYSQVKHVAPNMTFAYRHVAFPFAITAGAIVMVLSIAMEIRNYRQRKTLAGIERVS
Ga0209579_10000023363	F009834	AGGAGG	MNRIKSRFVNLISTGLAFLITLLATLLIVPGGASAKDHKPKGSNNQAQVVAHISFAGLSAVDMSMQKKLNDKYFLYVQHSKGQGVSIIDITKPAQAKDVGLLAWPDPAVSRKMNLSGDLAIIAENDAFPTQISSANDDLVLWDLSNPAAPRVVQKFSGVVKWLQDERNFIYVLNGDGLWVVSKPQERQPEQAGSSDSY
Ga0209579_1000002349	F036362	GAG	MFDVWKFRPLNHFQCLILTLAALSIFGSAQSNSGTDKDKDKKEETQKAASGASSKFIKVEGKVRCDKPEPTYSIDVPDRPGHALVLTKRHCTWTEPMELMGSKTKDGVSVSFTEKMEASLHVHSFEVDTLDSGEKLTFQSQGQVLAEKGPVDITGRWSYMRGTGKFKGIKGGGTYEGKLGADDVVTLELEGVYDPSDMAGDKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209579_10000023

Overview

Ecosystem & Geography

Associated Families

Sequences