NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209579_10000017

Scaffold Ga0209579_10000017


Overview

Basic Information
Taxon OID3300027869 Open in IMG/M
Scaffold IDGa0209579_10000017 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)522644
Total Scaffold Genes428 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)276 (64.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000072Metagenome / Metatranscriptome2651Y
F005152Metagenome / Metatranscriptome410Y
F006810Metagenome / Metatranscriptome364Y
F011690Metagenome / Metatranscriptome288Y

Sequences

Protein IDFamilyRBSSequence
Ga0209579_10000017166F000072N/AMIMTMDVERIIDDIEQLQEMFEAPDIRPLNASDISAANRRHDEMLAHSPWFQLWQRYGVCCRDESEGRPRIQS
Ga0209579_10000017203F005152GAGMKITLFILFVFCTAAAFGQNVGSVSSQSQPIQMAEHPQHASQHAMATEHPLVGSDTDTYSYAQGERPLWEFGPVSTPTPLGDIARAYRKEKTAAKKAEIIFEKQGS
Ga0209579_1000001725F011690N/AVPVSDTSLAAQDIQLKVQRSLSGEQRLMLAFEMSLFARELAREGIRQDHPEWPESRVDHELLRLAFLPAPLPARLR
Ga0209579_10000017390F006810GAGGMKRMLFSIILLLIPMLLPAQSRHQQGTIIRMRMTDCMGSQHGFMVAMSGGAKTDTGAQCPEYVLMGETVVYVIIGKTSDQLLPLAEVTRFRFQKNEMLIRVDDAPKESRFHIKAMMMRPEWDRDQKLEEAEASAMVKSHLDQAMLRDQQ
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