Scaffold Ga0209579_10000013

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10000013
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 555189
• Total Scaffold Genes: 486
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 328 (67.49%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000238	Metagenome / Metatranscriptome	1494	Y
F000348	Metagenome / Metatranscriptome	1250	Y
F000870	Metagenome / Metatranscriptome	851	Y
F005270	Metagenome / Metatranscriptome	406	Y
F005311	Metagenome / Metatranscriptome	405	Y
F009711	Metagenome / Metatranscriptome	314	Y
F021815	Metagenome / Metatranscriptome	217	Y
F045224	Metagenome / Metatranscriptome	153	Y
F077661	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_10000013291	F000870	AGGAG	LLVDNQPADHRALEEKTARQIIWSSDRSFQGWTCSQCEWNYPLPTLLNDPEARTAYDRLAAAKFREHKCADHLSRLPGGTADSENFTARIRKLVAQGFKPKDAVELFLQEIALEYRNQPKTLAQAKADGEDFLRRVRAGLI
Ga0209579_10000013310	F000238	AGTAG	MPSSSAVRAPRWYTIPVRAAVVTFVSTLLCFAVILLFAILGTAILAAMHGVSPDMRVAYRHIALPISMVAGCVIFVVALVTEIRHYRQAKTLTAIERMG
Ga0209579_1000001332	F009711	GAGG	MTLAIILIIAAVVSLAFILGIAASRSLQISHRDGRSGQIEPIDVEAFRNLTDPAEDDYLRTRLPASEFRTVRRERLHAMAAYVRTAGRNAAVLARIGQNAMTTGDERAAEAARQLVDDAVLLRKNAAFALFRIWIALAWPNSSFAAAPVLRGYERLSGRAMLLGRLQNPATPVRISATW
Ga0209579_10000013362	F000348	N/A	VLAPTLVVSLAVLAAGDWTPIGQTESGDKVSVSSVRVVKNNQRVALVRVEYKEPAQLPQGGPFVEMRARARFNCNSGVATPTSVWFYTRDHSGRFVVSKKATHDDQFGKDPEGGFADLVSKSVCGLTK
Ga0209579_10000013389	F005270	AGGA	MEQNLTDDVSGEDLVSIVASLEPDQLISEKEKHHCPRRQLTTTEMILFWALRLYLVFMFGVVLYQVWTGVR
Ga0209579_10000013424	F077661	N/A	MTRHIPRRSVGGISPLALKIALCRSKREIACLRNFVLGTQGLSAGSRLFEVTDIHSEETHTRRRFPGALRWLAGLILVAIAGSWLFLYIDSVYQRRRAESLFADLRSLDFSTAGFTEVRDIMVRNGSRPGATCNPQNCTFRLQIMTQLPRIPLLGRKAIFLYTTLPYIGLRSWIVYAQFDVRDGQLDKSGASVWEYRMERVDYNAYRQFIPLGYAVETQRNAASFDERPCRGQEYQVSVSHGGFKIPSDVLGTCVVQSAGTSVKRAFDVHLSCLNNPFRNCRFNELAPSAWADYSAVDRTEARDPYRYR
Ga0209579_1000001359	F021815	GGAGG	MKSDHNDNRSNEVRVELKYCEHCGGLWVRERGAGVVYCDNCQAKVSDLPIPKKKPGKVMLPIRSHTAVEDYGLEHEDDDLGYDDLEYEDETEFEAAGGVA
Ga0209579_1000001374	F005311	AGGAGG	MGSGICAAALVRAANAMLTALGGDQVSLLLPKMATAGDSAGQLGLVDPGVQEVIIAPVVVHNLPVGNLGPRRRIEFTLPAAAITDQLPGLGMGTVEDLFRAALGLTYGTDLFHIEAVAPENFAGTAYFYVVTAVE
Ga0209579_1000001378	F045224	GGA	MSDEDLSGKPRASSILKQGRTIPYTAKDFQLEVLAQLGEMQGTTQSLQQSLAAAVKGQEERGKLLRFDGRTLIAIGAIALSLTGYVLQDARNSSKRDADIETTKARVLRLEEIAATNTEGRVRTEVELGELREGQAEIKHMIEAHDSESKKLLPKK