NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209579_10000009

Scaffold Ga0209579_10000009


Overview

Basic Information
Taxon OID3300027869 Open in IMG/M
Scaffold IDGa0209579_10000009 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)652138
Total Scaffold Genes614 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)387 (63.03%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000281Metagenome / Metatranscriptome1382Y
F001920Metagenome / Metatranscriptome617Y
F005675Metagenome / Metatranscriptome393Y
F023386Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0209579_10000009202F023386GGAGVRTIERSFVKTIFAVVLLTGLIACSKPQPQQPESVEVPKTTGLERIPAADPSKYPHLNDMGSWKNPNLVVREDGIGIVDLSNREIHILTQEEIPAELATLPLSAWPYGRAVLITQAVPKNLTPETKADLRKNRALLLGTLKELDVQYFEAP
Ga0209579_10000009351F005675AGGAGMWIRESERFVHLNWFAIFSYTASLAISLAIWRGVFRAVGYLVK
Ga0209579_10000009413F000281N/AMPQSVKERVGKLREEIAEISEANRQYLQGGKKLIGASDQERRIQRLQEIMDELMSLTEWKKT
Ga0209579_10000009591F001920GGAGMSDSMSDGGADRGMVLNWRGPLLAAGIFATVFAILLLMAHQNESKTSDMGSSLREDPYGASLLFDSYRRAGYEVKRGQDKDSLSDQNASRTTAFFIGGYSSDDLLMRNEKLLGGAKFRERLEYFLTRGGRVVLVEPRGELKSKSQGWEVGREWGTPQEHTPPWISPDPHTMPADSEMIYLDADASWLKTDAHWTVLYSATAGANDKPDTTPHVYMAMRQAGNGELIAASEESFLLNETIKTHPNPVLLDFLAGGRPVIWVDETLHGLRQDEGVLWLVQRYRLQTALLLFWATLLILLWNMSGDLVRRPAQNSSAPIVRHGEGAGVAARRLLQRSIANERVVAECWEQFRRYWPQDAEAISADPRWGARLRTAVAQPPLAGYKELSQLIAERRASARGLGHINRNVSDNSTASR
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