Scaffold Ga0209579_10000003

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10000003
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1168820
• Total Scaffold Genes: 970
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 772 (79.59%)
• Novel Protein Genes: 22
• Novel Protein Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Associated Families: 22

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000522	Metagenome / Metatranscriptome	1055	Y
F000749	Metagenome / Metatranscriptome	908	Y
F001102	Metagenome / Metatranscriptome	777	Y
F001520	Metagenome / Metatranscriptome	679	Y
F002492	Metagenome / Metatranscriptome	554	Y
F003336	Metagenome / Metatranscriptome	493	Y
F004485	Metagenome / Metatranscriptome	436	Y
F005865	Metagenome	388	Y
F007233	Metagenome / Metatranscriptome	355	Y
F008958	Metagenome / Metatranscriptome	325	Y
F011872	Metagenome / Metatranscriptome	286	Y
F012141	Metagenome / Metatranscriptome	283	Y
F018635	Metagenome / Metatranscriptome	234	Y
F025789	Metagenome / Metatranscriptome	200	Y
F033134	Metagenome	178	Y
F037842	Metagenome / Metatranscriptome	167	N
F047844	Metagenome / Metatranscriptome	149	Y
F065986	Metagenome	127	N
F084527	Metagenome	112	Y
F087514	Metagenome / Metatranscriptome	110	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_10000003265	F084527	N/A	MPRRLKLSPLQRDIVMILEEAGAETVRTVIATLKASDQCEFAAQVDGLVTLGLVRKEENNLLLTEQGRMALRT
Ga0209579_10000003325	F000522	GAGG	MDHHEAVRKFEHLMLKEADHARELATELEGLAPILATENSRQLAQLQIKASHKQSKEFRELSEKVKEK
Ga0209579_10000003339	F001520	GGAGG	MNSIRFMYAAYIATWTIHVFYLGTLVRRFSKLRREMKDLGKGK
Ga0209579_10000003360	F000036	AGG	MAYKETFWMACDSTEQLRAEYGPFHTRAEAEAEAKKLGFGYLLRYEHILGENEEIEEVRCIFVELPGATPVGVEPAPVTLHTRCATCGEASAHEKGWQAEVWADIHEFEHSRHRVRLFEHARGKGLKEIGDWRG
Ga0209579_10000003583	F003336	GGAG	MGGTAAYGMYPRSIALPEIVCALNRAGFGNEDICMVLSPAHPVAEAVRDAKVTDIEREDGALGARMIGWISKFGAVVIPTVGFFIRSQAFFRALVTEQNFPALSRGSGTLLDLGFSECDAKRLGHQLSDVGALIYVSCPESSKADRALELLRRMGAREAASLAAIKVAGAAA
Ga0209579_10000003585	F002492	AGGA	MSNKATSTSSASPAGWHVLYQAALFETDPNKMPLRIAEAETAILVRMKELFTITSDHIEEDLILDDALYGLRALRNCVVQEASAA
Ga0209579_10000003683	F087522	N/A	MRRSLNILGSAGLAAMLSMAPVVGLHAQSHDSGEHKILLQADLKAGQVLRYELEAAGSFLPIADASGAILTPPRGPCDYALAAIVTLRPQAPDKDGNTPVEARYSETRVTSVGCALFSAVDFQRRLAALQASPVMFRVGPHAETAMERTRDGYFKYWDGGELLRKTTQDLLQTEFSQHPVAAGDSWKPRGQFAYARDHALKDLELSGADLRFRSMVQVDGKRCAWVTSQYVFSPIDLPAAGTASGGVIVPGAGNNAVAAVLHISLLLDPTSHHVAWLHRSQTIDNKLTLASPYETSDPRDDPAEPDDPQDSENPMPDLSSMRSDHPGRYPFMTFHFQEEARARLLPDQRSVEWLAALKRFEETPGPVSGAVPVAATKTLLPNAMIQAAKPLAVNRTTRVVVDSDSLMATPAGFTRYEKGLCRDVWFCATVSVALPGDVQVSEDTPLRTVYLARQEGLLLSVAVGPALDRRSVGLTEDEELRKEANYYLANYVWLAAKPGIGTNFSSATLDGYPGLITDFSATQRDLADIRGVLGLMLTPWGKVVPVSCSSDHASSADLQAICEKVVTSVSLQR
Ga0209579_10000003684	F047844	GGA	MKLSFSVRVGLAFVVWIGCLGTLAWAQDSLGDPSANPGDSLGDLARQTRAQHTPSGEGTSTKAQELVNEMQQEQEAADNAPVGFKNYDAGDYRLYVPFPFSLEGRENDGAVLLGSRLGITNTEVMAGTPIPIPPNSSDNDLTNVARQLAGLHGASAYCSAIKEGTHKAFRCSWQTSPRLLGHEVWGSMEFVVSSDRLIPVMCVSPDDVHQTCVVYDTYGHNTCSDREYQLYGWDHRKAQAAADASNRDERTTVQMCEQVIYPSIQLKEDIVVHPATISANKATKVVAVAAVRDQTEGDTGSQGPSLAELARRTRQATHAKAETSLNNSEGSSAPAGFQSFVLQYCQNPQQCSEATVIIPDKTEVVSRTNGQHIFKTALDGEPVFLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKADGVSTQELTIEDRYALMTRFRYQRDQKRWWIGERVLVQNRSGEFLVGCTAPQEHFADAEVLCTTLVNSLRLP
Ga0209579_10000003685	F012141	GGGGG	MRDRYWFWLGARLLAGVALIGWALSYLGTGSGEKEFQKTLEAMKQVHTFRVASTTNQVGVQHNEMLWEVDCPRDIVHHQMHMVMVSSTNSGEMKQDQMMVGNRTYERGSDGSWVPNRSGYQGASAKWYCRNLAEGTDSNLMPQIATMIKRGILQKGDKKTVNGVRCREWLVTMKGGFSGLEHDTVCLGLDDHLPYEMTVDWAHSRTSFSDYNVPIQFDAPEAILQPASTSTGVN
Ga0209579_10000003699	F011872	N/A	MQTGTMSGDSTTRKDSLKVEKVSLLILTLCVLVLVSLLVFKPF
Ga0209579_10000003701	F025789	GAGG	MHLWRIRLVLLFGTVLALPPAFAAPFVLFPKVTELASPDGRYIVRNADREGASTDFVGTFHSLWLTESATGHSRKLCDYLGVAAVAWSRNDFLIVTQYSRRTSQALVFSATGSPDPVMLDKPTLTYLVPIELRPALRGNDHVFVEASRVEDDTLYLTVWGYGQHDANGFRWHCQYALREGAISCTEERATH
Ga0209579_10000003727	F001102	AGGAG	MGAAVKKQIDVNRLKADLAASAVELLSAQCAADRVRLQYSAQDIVAFGEPHSLKRAINSAKALHQFFSQIEAQINHQEDNHRGKR
Ga0209579_10000003749	F087514	N/A	MAEATEGQDLRQDRPDGHSARDWQVLWFFIHLAAVYAIAEFVTPWLAGWTHGTLLPHLQHPTSSGRFEFFFSHIFAFSFIPAFLSGLVNARFKHKAAQFVWLVPAAILVFKFATFPAPSVFQSQFSAAFHQYFGSGFVIPESRDFQDLFSTASNPDMWRGMAQHQFTAPFYAGVAYSAAAWIALKIELSRKVAEGVKKWEQSRVEHQL
Ga0209579_10000003754	F018635	GGAGG	MLLNSMQGIPKSQHEEESSLLRRKIEEESSLLRRKIEELNKNTVLLIVEAARLIQGSKQLSDQLKSFEDPSKKRKLTLTVPE
Ga0209579_10000003777	F000749	AGGAG	MKRQSVVPPHAPNVTVRVSGKLFEGHLPYLDQLVKSAADCGLWPMLNLAHLEELDQAAAFYLMDGEDRDFGIVGCPGFVRDKMDLEGERKAA
Ga0209579_10000003816	F005865	GAGG	MPAPEPGHEWVLSGVNPRSDSVAESELLKAARSAWPKALAHVRQVQSQSPFNDDGLLVAEVWESVLQSVSMTLERMNGRRGEIGDLEAYLLGSFYHRLNRALRKEQRREEMIRLVSSVEELEVLGAENQAEQQDIEGALHAQEILDRMDAWSRKVWVAREYGYTWKHIGRVLGIPGDSVMLRFRRRMKILRARLSGGR
Ga0209579_10000003861	F007233	GGAG	MANRKQREHQRQLNQDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKSGDHRLVRKIGLIPDDAPVWRPKD
Ga0209579_10000003862	F033134	AGGA	MKQEQESKQLVTFSSLHIEVLGPKELGNSQQAIRGVTEFLHRVELDVGKLLRERAEMSPILDGFRLRFG
Ga0209579_10000003863	F037842	AGGAGG	LKQKTVKVRGEGVEYPALTGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKAGNIVKWRELKTRPVMRQVARR
Ga0209579_10000003865	F065986	GGA	MSNIAKRQGRMIRKGKEVQYGSVRIELIGPTELLHDREAKGAAIDFLRTEILASKDWLKDCARISPSLKRFRLISIRK
Ga0209579_10000003914	F004485	AGGAGG	MSNRERYTLSPASAEQFCQFWSAHMDALERHLSAKTWAIAAFTVVLTAYPIARIATPAILHAVVPDVVRTVLNLIIR
Ga0209579_10000003927	F008958	AGGAGG	VKLVRFEDINGRETFVNAERVNHISDYGSGTTEINFGGEKATVYVAMDVAKVASTLLKAAKT