Scaffold Ga0209167_10006001

Overview

Basic Information

• Taxon OID: 3300027867
• Scaffold ID: Ga0209167_10006001
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5966
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003174	Metagenome / Metatranscriptome	503	Y
F012133	Metagenome / Metatranscriptome	283	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209167_100060013	F003174	AGGAGG	MPNWQKWFLGLAFLAFSVPLQAQIEPIPNLKVVPIPLPGGDIIPPTVLPDGTVVPSYGLFNQFFPGPPNQSPPFDPMNADPQGITNFHGVTAMGYTSGFTADKKFVVVTDIRVYQGDYIGGQIADPNTAGATQSARAYGTFVEI
Ga0209167_100060014	F012133	GGA	VQISPDGNTLTIHLENVPVVDAVRFPPPVPNNFALDETNISPYQLTRARTSFDITYTKTPGTARQIRPATDDPLSPLNWAGKMWDATNSGSFSVAYDDGTFSASGTFDSSGNFGEMGTERNGFFVHHDEENDNDDAEAGAQSLSLPSQPTPMNQLAATAITNKPVRFVLLKGRVPVKVNH