NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209167_10000048

Scaffold Ga0209167_10000048


Overview

Basic Information
Taxon OID3300027867 Open in IMG/M
Scaffold IDGa0209167_10000048 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)150837
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)91 (72.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F000228Metagenome / Metatranscriptome1519Y
F003988Metagenome / Metatranscriptome458Y
F019689Metagenome / Metatranscriptome228Y
F020753Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0209167_1000004811F000036GAGGMIYQETFWMACDSTEQLRAEYGPFHTRAEAETEARRLGFGYLLRYEHLLGENEEIQEVRCIFIELPGAVPVNTEPVQTTLHTRCASCGESAVHEKGWEAEVWADIHEFEHSRHRVRLFKHARGIGLKEISGWRG
Ga0209167_10000048122F019689AGGAGGMSPLVQRPRAQNSQADPTDQHWSMLVFESLSAGVGAVFLGFVVVLAIVGVYVGIVWPLTFWDLANAGLEKYADWVQTALWSVFAGGTAAGYWCFSGLAFKNKRPAKSVRQPIRNTKHVRV
Ga0209167_1000004828F000228N/AMFLVPCSCGTTFAVAENYDRQGTAWSRYLPCPGCGKRHDPKNRLLQMGYYRDGFWKVDEC
Ga0209167_1000004847F003988GGAMQFTCVRCKHSVTTAEFDARNGNLRTQAATALNQHAAQVHHEPVMVSSLDVQQRIWRA
Ga0209167_1000004854F020753N/AMRVVLRAQRQFNKQYNHFATALPELVHSGSFTKRMVNTNRGDYVAHFEGKKDSFVLTMTPKQLDAQHRSFYAEDDFKIHADDSKLADANSPVVK
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