Scaffold Ga0209167_10000007

Overview

Basic Information

• Taxon OID: 3300027867
• Scaffold ID: Ga0209167_10000007
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 380855
• Total Scaffold Genes: 308
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 242 (78.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F002813	Metagenome / Metatranscriptome	528	Y
F004373	Metagenome / Metatranscriptome	441	Y
F008143	Metagenome / Metatranscriptome	338	Y
F019446	Metagenome / Metatranscriptome	229	Y
F020136	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209167_10000007192	F019446	GAGG	VLGKERSPNWSRSRSNERQFDFRKYGTTVTDAENQFLENMPDEIKEVLRWHADSQSRGRASQTIADFAGRFLGGMYEDGAVLPTNLSASAPEVLALVLLQHRTSARSTAAWLNLGFALRRVALYRTQDAEETNRARLQSAIQVFGRAIQLDPDNTGKNIRAWTGMSFAYHMLAMYEKELECCGKALESDRSDPKLWLKYSFALKSAGRDDEALSTMNDAYDAYIRAGRPEELREVFADVQSATQRRCRERMAQ
Ga0209167_10000007193	F008143	GAGG	MKSVSGIHRTRLAASKVHRHLVKEARRTVQKLGWQVPEHGISPTLVGAIPLPFPVPDSFEAAFGYRGNLRFVQFGYVAGSRQFGYSDGGDDLPSDASLWSWFLHHPVIAPHLPETLYPTLYGTFPSGSERPSLEQIMRRGADLPTCHCLLLDTRDRRAYVAERDQAMILFALMEPEEGDAHNVFVDGMLISSGSEDYKEPPPPWLLEQIRRFLDGQVVGSQGA
Ga0209167_10000007214	F000042	AGGA	MKNIKFVVKVNRGGTRVPQYVQRVDPTPIQMTTNRKLALVMGKFTAEDAVKSLQNSRCIPELESVQVNASIRVV
Ga0209167_10000007258	F020136	GAGG	VKNIRAIALIFFAVATWLAHAQDRPTSLSEARAAIDANLKTPEGKDFDERLGKDFFEKHMGPLRQCRQSAGNDLDSFWILLKLDKDGAAREVLLYPTTKLGTCAHEALLKDRFLAPPRPGYWVSVYLKISH
Ga0209167_10000007300	F004373	GAG	MSAYIQQMLDGDRTSLDLAVGPKTPGFTAIGVFLFFGAIMATLAATTLQWRGTDLDRLWTLNPTAYNQLAPLGRIVGILFSVLGAALTTAAIGWFRRRLWGWRLAVVIISTQVLGEIVNCVRGDWLRGGTGVIIAGALLLFLLQPRIRAAFV
Ga0209167_1000000742	F002813	GAGG	MDHLEVLREKVARLRAEIGQIQRLNEEYRLQKPAAAEAQVAHGQRHERLQAIQQELAQVHDLGRRVVSVAQMKGKIRSQLHPDEQARAS