NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209167_10000003

Scaffold Ga0209167_10000003


Overview

Basic Information
Taxon OID3300027867 Open in IMG/M
Scaffold IDGa0209167_10000003 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)614732
Total Scaffold Genes547 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)359 (65.63%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002346Metagenome / Metatranscriptome568Y
F003240Metagenome / Metatranscriptome498Y
F003947Metagenome / Metatranscriptome460Y
F006516Metagenome / Metatranscriptome371Y
F062018Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209167_10000003113F062018GAGGMSGVVDRSPLFPAFHCSDCGSDVGFRSRRRTLVERFILPMFLLKPVRCGECFRRDYRLVFTPVKNRLSEASGLQQMARPSAPRDRNVA
Ga0209167_10000003118F002346GGAMRSLDRLCAGTLFLLAIVECWLVPKAYTGRIWILGTDLALLLAAMLNVLRIRNGYAVQGLKMFCIAGNVTMLTFFAALMASIGQVITLHNPQLLLVAGLLVIETAFSLGKNA
Ga0209167_10000003189F003240N/AMLTEEDKQWISQRLEKVETTLLTEFHKWASPVELRQRSHAAALRALDAEVESLSDRLKNLEGR
Ga0209167_10000003445F003947N/ALEIDVDFQVNGETYFLSLAEDDRQWEVFVATAEGTRPIPVYVDGAEAEDLTVVVEDKDRRKIVN
Ga0209167_1000000397F006516AGGMISLFMPLVLCLTVIASVGLGVLAAYAAFMGILHAVGHSRPEPARPRLVLVPTQNHASGD
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