Scaffold Ga0209167_10000001

Overview

Basic Information

• Taxon OID: 3300027867
• Scaffold ID: Ga0209167_10000001
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 640861
• Total Scaffold Genes: 555
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 415 (74.77%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000477	Metagenome / Metatranscriptome	1097	Y
F000595	Metagenome / Metatranscriptome	999	Y
F001352	Metagenome / Metatranscriptome	717	Y
F001535	Metagenome / Metatranscriptome	675	Y
F004969	Metagenome / Metatranscriptome	417	Y
F022698	Metagenome / Metatranscriptome	213	Y
F031573	Metagenome / Metatranscriptome	182	Y
F034304	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209167_10000001152	F034304	AGGAG	MSGINGDKSRFNRERKQKIAKRNRNRELLKSLGAPKPVAPAGSRTKAVAE
Ga0209167_10000001245	F031573	AGGA	MKRNSRIRRTGVLAAALLMSLFFIASSQAQTDLVVFAGKFTLTDQVLWGKTVLQPGDYTITVGFTSMPTFALVRDGKGRAVARFASRIDSGLTSAGNALLIREKDGQLRVYSLALRSLGRVLVYDPALAREAVLPARAPHTVPVMLANK
Ga0209167_10000001252	F001352	GAGG	MSSRELSPEWVLSSFIPPVAAPQHEISELIVVARRLWPSVKGHAYREQPGKSSDEALAFASEVWEGVLRSVAKTIQRSNGKNWRIKNMEAYLFGAFHHRFNRALKKERRRLQMMQHLPSSHDLERLRQAHDSKAVRDLEQSIQLKEAVRNMDEWTRKVWAARQYGYSWKEIAAQLRLTEPQVKLRFRYAIGKLRARLSDDP
Ga0209167_10000001323	F001535	AGGGGG	MAMEPSERGAGSNPGEAEAHIRSAQQILKTLQQKIGEHPEIGAAITKLEMALNELAIQTGGLL
Ga0209167_1000000134	F000477	GAGG	MPATPTKKFTPEIDAQLYDEFVAVAEQNGQTKRHVLEQALAFYLHNVVPSQHLVRPAVMDAFEQSVARNRDLLQRLAK
Ga0209167_10000001413	F004969	GGAGG	MNGKSGFGSLLLAAALASSLASIGCAEHHYYRVYDPYYTDYHVWNGDEVVYYRRWAAETHRDPDRDFRRIRPEEQKEYWTWRHNHGDHDRR
Ga0209167_10000001433	F000595	AGGAG	MDGLTGLIAVITIFGMPTAVLGMYTYYRVRKLRTEERMAAISRGVAVPMEPELAEAARSRRSGILLIAAAIGFTITFSLIARVEPDAWVAASFGAIPFTLGLGFFLDSALIRHDAHTS
Ga0209167_100000017	F022698	GGAG	VQDVIRRAEGELRQLIEERAEVTKRIGTVKQTIVGLANLFGDSILDAALLDLVDRKSGPRQPGITRACRKVLLEAGRPMSARDVCDEIQRSLPGLLARHKDPMATMNTILSRLVEYGEATVLPGDRGQRCWQWAAERQDRRGGAPDGEGSDG