Scaffold Ga0209813_10424678

Overview

Basic Information

• Taxon OID: 3300027866
• Scaffold ID: Ga0209813_10424678
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 540
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014924	Metagenome	259	Y
F085833	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209813_104246781	F014924	AGGAGG	MQSAAARGFTVVTIVTLVFTPVWRGGHWVEILTGKTKETTVVKCQANDPCPAQKHITRKVVLHP
Ga0209813_104246782	F085833	N/A	VSSLLFLAAGIFLVAFDFQNLLSWRGGRTIKPGRARSHDFTIVVPVFGHPRYFDGERLVRYRANVLVALEISAPMMAEFADELEADG