NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209755_10259789

Scaffold Ga0209755_10259789


Overview

Basic Information
Taxon OID3300027864 Open in IMG/M
Scaffold IDGa0209755_10259789 Open in IMG/M
Source Dataset NameCornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1708
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000009Metagenome8556Y
F005709Metagenome392Y

Sequences

Protein IDFamilyRBSSequence
Ga0209755_102597892F005709N/AMLTEDGNCTCEIKPRIAMAKAAFNKKKNLFTSKLDLNLRKKLVRCYGWSIALYGSEM
Ga0209755_102597893F000009GGAMEKISWTDQVRNEEVLLRVDEQRNILHEIIKLKANWIGHILRRNCLLKQVIEGKIKGQTEVTRRQGRRRKKLLDELKDRKGYCELKEEALDRTMWRNRFARGFGPVV

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