Scaffold Ga0209755_10147684

Overview

Basic Information

• Taxon OID: 3300027864
• Scaffold ID: Ga0209755_10147684
• Source Dataset Name: Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2376
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004007	Metagenome	457	Y
F008821	Metagenome	327	Y
F019492	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209755_101476841	F008821	N/A	LQYCYITVLWIHGLTVMLLVQGRGEMAVTPAVTTVLLHHSAMDTWTDCSVFSTG
Ga0209755_1014768410	F004007	GGA	VLLVQGRGEMAVLPAVTAVLLHHSAMDTWTDCSVVSTG
Ga0209755_1014768411	F019492	GGA	MLLVQGRGEMAVLPAVTAGLLHHSAMDTWTDCSVVSTGYRGNGGSACSYCSTVTSHCYGYRD
Ga0209755_101476845	F004007	GGA	MLLVQQRGDIAFVLPVTAVLLHHIAVDIWIDCNFVSTG
Ga0209755_101476846	F004007	GGA	MLLVQGRGEMAVVFAVTAVLLHHIAMDIWNDCNVLCTG
Ga0209755_101476847	F004007	GGA	MFFVQGRGDIAFLTAVTAVLLLHIAMDIWTDCNVL
Ga0209755_101476848	F004007	GGA	MFFVQGRGDIAFLNAVTAVLLLHIAMDIWTDCNVLCTG