Scaffold Ga0209755_10055254

Overview

Basic Information

• Taxon OID: 3300027864
• Scaffold ID: Ga0209755_10055254
• Source Dataset Name: Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4027
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000316	Metagenome	1315	Y
F009933	Metagenome	311	Y
F016416	Metagenome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209755_100552542	F016416	N/A	VFLILSFLEIQADRRQKSVSVEFSFDTVFAFKNPVSAADVMVLLTIA
Ga0209755_100552545	F000316	AGGTGG	MRRVHINLCPSSLSASIMAANMWKNSLKDVESDNNKILYKKLIDFFTSKR
Ga0209755_100552546	F009933	N/A	MFKTIEEAADCEIQTSIGFLNARNVLPSEIHHQICQVYGVNAMSDGMVRKCVRMFNDGRQNVHDEARIGRPSLVNDDLVRKFNERVRDDRLFTISDLSLHFPQISRTLLNDTVISG