Scaffold Ga0209755_10025862

Overview

Basic Information

• Taxon OID: 3300027864
• Scaffold ID: Ga0209755_10025862
• Source Dataset Name: Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5976
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026033	Metagenome / Metatranscriptome	199	Y
F031544	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209755_100258624	F031544	AGGA	LPGADIDSDHNLLVAKFRTRLKKIIRFQKNRPRWDFEKLYTQKQRVQENLEEKLCAIECESGNAEVQWNNIKECMLDTISDLVGKVEKRARKPWITQEMITKMVERRKWKNVNNE
Ga0209755_100258625	F026033	GAGG	LKRATEMAKKEYLENICNEIMEFPRTGRYNLMHMKTKELGWNETQGIQSIGIEDSQGNRIIEQRQVLKMWENYITELYDRPNRLETLEFEPEEEVDTDEKGPHILQSEVEKAIKEMRNRKATRDDDIPGDVLKLLGKGGLKILTKLSNTIYNTGEWPQKLQ