Scaffold Ga0209755_10005400

Overview

Basic Information

• Taxon OID: 3300027864
• Scaffold ID: Ga0209755_10005400
• Source Dataset Name: Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14557
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Chiroptera → Microchiroptera → Rhinolophidae → Rhinolophinae → Rhinolophus → Rhinolophus ferrumequinum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Petit - Saut dam, French Guiana
• Coordinates
  • Lat. (^o): 5.0626
  • Long. (^o): -53.0462

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054130	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209755_1000540011	F054130	N/A	VRVLHSIRSISSTLSSCCGQTTWLDNKFRELIAVKVLHNSLLNTTVFAFKVVPLGSYAPIPAPSPPFKTILELVLWNGLRSYSCIAPDVMNVIKMPSFQYFLYRREQKKVTGGLDPVNRQGVSTQLFV