Basic Information | |
---|---|
Taxon OID | 3300027864 Open in IMG/M |
Scaffold ID | Ga0209755_10004929 Open in IMG/M |
Source Dataset Name | Cornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 15453 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (62.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Petit - Saut dam, French Guiana | |||||||
Coordinates | Lat. (o) | 5.0626 | Long. (o) | -53.0462 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000016 | Metagenome | 6618 | Y |
F034229 | Metagenome | 175 | Y |
F034972 | Metagenome | 173 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209755_100049291 | F000016 | N/A | EGKRPLGRPRRRWVDNIRMDLQEVGCGHVDWIGLAQDRDRWRMLVSAVMNLQVP |
Ga0209755_100049295 | F034229 | N/A | VQRPIDPSAVVTVGTRAGSPVLEAYQEHFAIPAGSPPLCQSGDPLAAASSSGRGRSRIGPNLVRADV |
Ga0209755_100049296 | F034972 | GAG | MCKCDNAVVGEKRKRYESSVRGCIVIMEQPIAHALQFRSFSPNVLPQTAKNIAVEPGVHGLAFGGKFMVHNPSNVEKHDKHALGRVAALPRLRRSWGSRALPLRRLLFSLGIIPVDPTLVPSDDPRHEG |
⦗Top⦘ |